Cytoscape Desktop MCP

Drive a running Cytoscape Desktop to load, lay out, and style biological networks.

General capability

Provider	cytoscape
Owner	Not yet linked to a registered owner
Protocol	MCP
Version	1.0.3
Status	ACTIVE
Source registry	mcp-registry
Source record	https://registry.modelcontextprotocol.io/v0/servers/io.github.cytoscape%2Fcytoscape-desktop-mcp-bridge
Repository	https://github.com/cytoscape/cytoscape-desktop-mcp
Website	https://github.com/cytoscape/cytoscape-desktop-mcp
Authentication required	No
First seen by AgentGraph	8/16/2026, 11:02:06 PM
Last seen by AgentGraph	8/17/2026, 10:37:58 AM
Source last updated	8/11/2026, 8:08:17 PM

Transport

[
  {
    "kind": "package",
    "identifier": "https://github.com/cytoscape/cytoscape-desktop-mcp/releases/download/mcpb-v1.0.3/cytoscape-mcp.mcpb",
    "registryType": "mcpb",
    "transportType": "stdio"
  },
  {
    "kind": "package",
    "identifier": "@cytoscape/cytoscape-desktop-mcp-bridge",
    "registryType": "npm",
    "transportType": "stdio"
  }
]

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